R Markdown: The Definitive Guide A PreTeXt Edition

Ricardo Bion, Robert Chang, and Jason Goodman (2018). How R Helps Airbnb Make the Most of its Data. The American Statistician, 72(1), 46–52. https://doi.org/10.1080/00031305.2017.1392362

Chris H.J. Hartgerink, Jelte M. Wicherts, and Marcel A.L.M. van Assen (2017). Too good to be false: Nonsignificant results revisited. Collabra: Psychology, 3(1). https://doi.org/10.1525/collabra.71

Donald E. Knuth (1984). Literate programming. The Computer Journal, 27(2), 97–111.

Julia S.S. Lowndes et al. (2017). Our path to better science in less time using open data science tools. Nature Ecology & Evolution, 1(6). https://doi.org/10.1038/s41559-017-0160

Yihui Xie (2015). Dynamic Documents with R and knitr, 2nd ed. Chapman and Hall/CRC. ISBN 978-1498716963. https://yihui.name/knitr/

Yihui Xie (2016). bookdown: Authoring Books and Technical Documents with R Markdown. Chapman and Hall/CRC. ISBN 978-1138700109. https://bookdown.org/yihui/bookdown

Yihui Xie, Alison Presmanes Hill, and Amber Thomas (2017). blogdown: Creating Websites with R Markdown. Chapman and Hall/CRC. ISBN 978-0815363729. https://bookdown.org/yihui/blogdown

Yihui Xie, J.J. Allaire, and Garrett Grolemund (2018). R Markdown: The Definitive Guide. Chapman and Hall/CRC. ISBN 9781138359338. https://bookdown.org/yihui/rmarkdown/

R Core Team. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. https://www.r-project.org/

Yihui Xie, Alison Presmanes Hill, and Amber Thomas. blogdown: Create Blogs and Websites with R Markdown. R package. https://github.com/rstudio/blogdown

Yihui Xie. knitr: A General-Purpose Package for Dynamic Report Generation in R. R package. https://yihui.org/knitr/

Yihui Xie. bookdown: Authoring Books and Technical Documents with R Markdown. R package. https://github.com/rstudio/bookdown

Yihui Xie, Joe Cheng, and Xianying Tan. DT: A Wrapper of the JavaScript Library DataTables. R package. https://github.com/rstudio/DT

Dan Vanderkam, JJ Allaire, Jonathan Owen, Daniel Gromer, and Benoit Thieurmel. dygraphs: Interface to Dygraphs Interactive Time Series Charting Library. R package. https://github.com/rstudio/dygraphs

JJ Allaire, Barbara Borges, and Rstudio. flexdashboard: R Markdown Format for Flexible Dashboards. R package. https://github.com/rstudio/flexdashboard

Joe Cheng, Carson Sievert, Winston Chang, Yihui Xie, and Jeff Allen. htmltools: Tools for HTML. R package. https://github.com/rstudio/htmltools

Ramnath Vaidyanathan, Yihui Xie, JJ Allaire, Joe Cheng, and Kenton Russell. htmlwidgets: HTML Widgets for R. R package. https://www.htmlwidgets.org

Changcheng Li. JuliaCall: Seamless Integration Between R and Julia. R package. https://github.com/Non-Contradiction/JuliaCall

Joe Cheng, Bhaskar Karambelkar, and Yihui Xie. leaflet: Create Interactive Web Maps with the JavaScript Leaflet Library. R package. https://rstudio.github.io/leaflet/

JJ Allaire, Jeffrey Horner, Yihui Xie, Vicent Marti, and Natacha Porte. markdown: Render Markdown with the C Library Discount. R package. https://github.com/rstudio/markdown

Yihui Xie and Romain Lesur. pagedown: Paginate the HTML Output of R Markdown with CSS for Print. R package. https://github.com/rstudio/pagedown

Hadley Wickham and Jay Hesselberth. pkgdown: Make Static HTML Documentation for a Package. R package. https://pkgdown.r-lib.org

Yixuan Qiu. prettydoc: Creating Pretty Documents from R Markdown. R package. https://github.com/yixuan/prettydoc

Kevin Ushey, JJ Allaire, and Yuan Tang. reticulate: Interface to Python. R package. https://github.com/rstudio/reticulate

Christophe Dervieux, Yihui Xie, and Emily Riederer. rticles: Article Formats for R Markdown. R package. https://github.com/rstudio/rticles

JJ Allaire, Christopher Gandrud, Kenton Russell, and CJ Yetman. revealjs: R Markdown Format for reveal.js Presentations. R package. https://github.com/rstudio/revealjs

Julien Barnier. rmdformats: HTML Output Formats and Templates for Rmarkdown Documents. R package. https://github.com/juba/rmdformats

Yihui Xie. servr: A Simple HTTP Server to Serve Static Files or Dynamic Documents. R package. https://github.com/yihui/servr

Winston Chang, Joe Cheng, JJ Allaire, Yihui Xie, and Jonathan McPherson. shiny: Web Application Framework for R. R package. https://shiny.rstudio.com

Barret Schloerke, JJ Allaire, and Barbara Borges. learnr: Interactive Tutorials for R. R package. https://rstudio.github.io/learnr/

JJ Allaire, Yihui Xie, Christophe Dervieux, Jonathan McPherson, Javier Luraschi, Kevin Ushey, Aron Atkins, Hadley Wickham, Joe Cheng, Winston Chang, and Richard Iannone. rmarkdown: Dynamic Documents for R. R package. https://github.com/rstudio/rmarkdown

Yihui Xie. tinytex: Helper Functions to Install and Maintain TeX Live, and Compile LaTeX Documents. R package. https://github.com/rstudio/tinytex

Yihui Xie and JJ Allaire. tufte: Tufte’s Styles for R Markdown Documents. R package. https://github.com/rstudio/tufte

Winston Chang. webshot: Take Screenshots of Web Pages. R package. https://github.com/wch/webshot

Yihui Xie. xaringan: Presentation Ninja. R package. https://github.com/yihui/xaringan

Hadley Wickham (2015). R Packages. O’Reilly Media. ISBN 1491910593. http://r-pkgs.had.co.nz